JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JMJD1C_chr10_63162225_63470977	1/0	c0010	7623	4	3	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0011	7623	3	0	0	3	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0012	7623	2	2	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0013	7623	2	0	1	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0014	7617	2	0	0	2	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0015	7623	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0016	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0017	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0018	7623	1	0	0	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0019	7623	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0020	7623	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0021	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0022	7623	1	0	1	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0023	7623	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0024	7623	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0025	7623	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0026	7623	1	0	0	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0027	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0028	7623	1	0	0	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0029	7623	1	0	1	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0030	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0031	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0032	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0033	7623	1	0	1	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0034	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0035	7617	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0036	7623	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0037	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0038	7623	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD4_chr1_227726191_227740302	1/1	c0001	1254	203	33	33	101	6	28	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0002	1254	82	38	14	17	3	10	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0003	1254	79	1	22	47	3	6	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0004	1254	37	9	2	24	1	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0005	1254	11	11	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0006	1254	4	0	3	0	0	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0007	1254	3	0	1	0	2	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0008	1254	2	0	1	0	1	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0009	1254	2	0	0	2	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0010	1254	2	0	2	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0011	1254	2	0	0	1	0	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0012	1254	2	0	0	0	2	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0013	1254	1	0	1	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0014	1254	1	0	1	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0015	1254	1	1	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0016	1254	1	1	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0017	1254	1	0	0	1	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0018	1254	1	0	0	1	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	c0019	1254	1	0	0	0	0	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD6_chr17_76713451_76731606	1/1	c0001	1212	434	98	78	202	14	40	copy fasta	JMJD6	chr17	76713451	76731606
JMJD6_chr17_76713451_76731606	0/0	c0002	1212	2	0	0	0	0	2	copy fasta	JMJD6	chr17	76713451	76731606