JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JMJD6_chr17_76713451_76731606	0/0	c0003	1212	2	0	0	0	0	2	copy fasta	JMJD6	chr17	76713451	76731606
JMJD6_chr17_76713451_76731606	0/0	c0004	1212	1	0	0	1	0	0	copy fasta	JMJD6	chr17	76713451	76731606
JMJD6_chr17_76713451_76731606	0/0	c0005	1212	1	0	0	1	0	0	copy fasta	JMJD6	chr17	76713451	76731606
JMJD7_chr15_41823092_41842581	1/1	c0001	951	347	77	71	138	14	45	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0002	951	8	7	1	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0003	951	5	0	0	5	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0004	951	4	3	0	0	1	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0005	951	3	0	0	3	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0006	951	3	0	0	3	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0007	951	2	2	0	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0008	951	2	0	0	0	0	2	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0009	951	2	2	0	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0010	951	2	0	2	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0011	951	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0012	951	1	1	0	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0013	951	1	0	0	0	1	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0014	951	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0015	951	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0016	951	1	0	0	0	0	1	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0017	951	1	0	1	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	c0018	951	1	0	1	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD8_chr16_676670_689334	1/1	c0001	795	328	82	59	127	12	46	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0002	795	11	10	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0003	795	6	0	0	6	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0004	795	4	0	0	4	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0005	795	2	2	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0006	795	2	0	0	2	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0007	795	2	2	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0008	815	2	0	0	2	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0009	795	1	0	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0010	795	1	0	0	1	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0011	795	1	0	0	1	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0012	795	1	0	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0013	795	1	0	0	1	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0014	795	1	0	0	1	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	c0015	795	1	0	0	1	0	0	copy fasta	JMJD8	chr16	676670	689334
JMY_chr5_79231131_79332211	0/1	c0001	2967	124	22	22	54	9	16	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0002	2967	91	8	26	38	5	14	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0003	2967	43	11	0	31	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0004	2967	22	5	0	13	1	3	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0005	2967	17	17	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0006	2967	9	9	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0007	2967	5	5	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0008	2967	3	1	1	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0009	2967	3	3	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0010	2967	3	3	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0011	2967	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0012	2967	2	2	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0013	2967	2	0	2	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0014	2967	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211