JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JMY_chr5_79231131_79332211	0/0	c0015	2967	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0016	2967	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0017	2967	2	0	2	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0018	2967	1	0	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0019	2967	1	0	0	1	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	1/0	c0020	2967	1	0	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0021	2967	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0022	2967	1	0	0	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0023	2967	1	0	0	0	1	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0024	2967	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	c0025	2967	1	0	0	1	0	0	copy fasta	JMY	chr5	79231131	79332211
JOSD1_chr22_38680543_38705943	1/1	c0001	609	309	66	59	132	8	42	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	c0002	609	55	19	1	34	0	1	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	c0003	609	9	9	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	c0004	598	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	c0005	609	1	0	0	0	0	1	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	c0006	609	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD2_chr19_50500998_50516191	1/1	c0001	567	368	94	77	138	14	43	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0002	567	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0003	567	1	1	0	0	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0004	567	1	1	0	0	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0005	567	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0006	567	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0007	567	1	0	1	0	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0008	567	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	c0009	567	1	0	0	0	0	1	copy fasta	JOSD2	chr19	50500998	50516191
JPH1_chr8_74229700_74326540	1/1	c0001	1986	281	58	49	132	12	28	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0002	1986	13	9	4	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0003	1986	11	9	2	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0004	1986	7	7	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0005	1986	4	4	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0006	1986	3	0	0	3	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0007	1986	2	1	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0008	1986	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0009	1986	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0010	1986	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0011	1986	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0012	1986	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0013	1986	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0014	1986	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0015	1986	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	c0016	1986	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH2_chr20_44101590_44192188	0/1	c0001	2091	126	10	30	53	8	24	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0002	2091	71	19	8	38	2	4	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	1/0	c0003	2091	29	5	4	15	3	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0004	2091	26	20	2	3	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0005	2091	20	1	1	14	0	4	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0006	2091	20	4	6	7	0	3	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0007	2091	10	3	3	1	1	2	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0008	2091	7	7	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188