JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JPH2_chr20_44101590_44192188	0/0	c0009	2091	5	5	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0010	2091	4	2	1	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0011	2091	2	0	0	2	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0012	2091	2	0	0	1	1	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0013	2091	2	1	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0014	2091	2	1	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0015	2091	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0016	2091	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0017	2091	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0018	2091	1	0	0	0	1	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0019	2091	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0020	2091	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0021	2091	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0022	2091	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0023	2091	1	0	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0024	2091	1	0	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0025	2091	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	c0026	2091	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH3_chr16_87597508_87703156	0/0	c0001	2247	67	4	9	45	1	8	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0002	2247	64	5	9	35	2	13	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0003	2247	53	21	9	18	0	5	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	1/0	c0004	2247	45	2	9	26	3	4	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0005	2247	28	7	10	7	3	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/1	c0006	2247	14	3	2	1	2	5	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0007	2247	13	1	5	5	1	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0008	2247	12	7	3	0	0	2	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0009	2247	10	4	5	0	1	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0010	2247	7	5	2	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0011	2247	6	5	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0012	2247	6	4	0	0	0	2	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0013	2247	4	4	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0014	2247	3	3	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0015	2247	3	0	0	3	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0016	2247	3	3	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0017	2247	3	0	3	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0018	2247	2	2	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0019	2247	2	2	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0020	2247	2	0	0	2	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0021	2247	2	1	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0022	2247	2	2	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0023	2247	2	0	2	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0024	2247	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0025	2247	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0026	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0027	2247	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0028	2247	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0029	2247	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0030	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0031	2247	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0032	2247	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156