JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JPH3_chr16_87597508_87703156	0/0	c0033	2247	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0034	2247	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0035	2247	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0036	2247	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0037	2247	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0038	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0039	2247	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0040	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0041	2247	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0042	2247	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0043	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0044	2247	1	0	0	0	1	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0045	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0046	2247	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0047	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0048	2247	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0049	2247	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	c0050	2247	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH4_chr14_23563038_23583790	1/1	c0001	1887	320	68	70	129	12	39	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0002	1887	30	25	2	2	0	1	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0003	1887	3	3	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0004	1887	2	0	0	0	2	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0005	1887	2	2	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0006	1887	1	1	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0007	1887	1	1	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0008	1887	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0009	1887	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0010	1887	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0011	1887	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	c0012	1887	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPT1_chr17_75130248_75159512	1/1	c0001	465	386	94	73	160	17	40	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	c0002	465	1	0	0	0	1	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	c0003	465	1	0	1	0	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT2_chr16_1673279_1707086	1/1	c0001	573	381	85	61	185	10	38	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	c0002	573	2	0	0	0	2	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	c0003	573	2	1	1	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	c0004	573	1	0	0	1	0	0	copy fasta	JPT2	chr16	1673279	1707086
JRKL_chr11_96385013_96398561	1/1	c0001	1575	427	91	74	202	16	42	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	c0002	1575	1	1	0	0	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRK_chr8_142652460_142674967	0/0	c0001	1707	212	32	43	109	11	17	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	1/1	c0002	1707	171	24	27	89	5	24	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0003	1707	16	11	0	4	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0004	1707	15	13	2	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0005	1707	10	0	3	5	1	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0006	1707	5	0	0	5	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0007	1707	5	1	4	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0008	1707	5	5	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0009	1707	2	2	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0010	1707	2	0	0	2	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0011	1707	2	0	0	0	1	1	copy fasta	JRK	chr8	142652460	142674967