JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JRK_chr8_142652460_142674967	0/0	c0012	1707	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0013	1707	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0014	1707	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0015	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0016	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0017	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0018	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0019	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0020	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0021	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0022	1707	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0023	1707	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0024	1707	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0025	1707	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0026	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0027	1707	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0028	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0029	1707	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0030	1707	1	0	1	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0031	1707	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	c0032	1707	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JSRP1_chr19_2247252_2261417	1/1	c0001	996	205	28	41	89	15	30	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0002	996	81	3	23	49	2	4	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0003	996	58	41	2	10	0	5	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0004	996	47	1	10	35	0	1	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0005	996	13	7	3	0	1	2	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0006	996	11	0	2	8	0	1	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0007	996	4	4	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0008	996	3	0	0	3	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0009	975	3	3	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0010	996	2	2	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0011	996	2	1	1	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0012	996	2	0	0	0	0	2	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0013	996	1	1	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0014	996	1	1	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0015	996	1	0	1	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0016	996	1	0	1	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	c0017	996	1	0	0	0	0	1	copy fasta	JSRP1	chr19	2247252	2261417
JTB_chr1_153969269_153982674	1/1	c0001	441	374	71	71	174	12	44	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	c0002	441	10	9	1	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	c0003	441	1	1	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	c0004	441	1	1	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JUNB_chr19_12786486_12798315	1/1	c0001	1044	358	94	63	140	16	43	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	c0002	1044	2	0	2	0	0	0	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	c0003	1044	1	0	1	0	0	0	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	c0004	1044	1	0	0	0	0	1	copy fasta	JUNB	chr19	12786486	12798315
JUND_chr19_18274694_18286622	1/1	c0001	1044	395	81	72	181	16	43	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	c0002	1035	4	2	1	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	c0003	1044	2	0	0	2	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	c0004	1044	2	0	0	2	0	0	copy fasta	JUND	chr19	18274694	18286622