JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JUND_chr19_18274694_18286622	0/0	c0005	1044	1	0	0	0	0	1	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	c0006	1044	1	0	1	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	c0007	1044	1	1	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	c0008	1044	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	c0009	1044	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUN_chr1_58775791_58789047	1/1	c0001	996	407	73	75	194	17	46	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	c0002	996	20	15	4	0	0	1	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	c0003	996	11	4	3	2	1	1	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	c0004	996	1	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	c0005	996	1	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUP_chr17_41749609_41791711	0/0	c0001	2238	149	26	35	55	7	26	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0002	2238	114	7	21	75	3	8	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0003	2238	72	28	11	30	2	1	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0004	2238	44	10	2	22	3	7	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0005	2238	9	9	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0006	2238	3	0	0	0	1	2	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0007	2238	3	3	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0008	2238	2	1	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0009	2238	2	2	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0010	2238	2	2	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0011	2238	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0012	2238	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0013	2238	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0014	2238	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0015	2238	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0016	2238	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0017	2238	1	0	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0018	2319	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0019	2238	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	c0020	2238	1	0	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
KALRN_chr3_124028369_124731325	0/0	c0001	8961	4	3	1	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0002	8961	4	2	2	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0003	8961	4	1	3	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0004	8961	3	2	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0005	8961	3	0	0	3	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0006	8961	3	0	0	3	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0007	8961	3	1	2	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0008	8961	3	2	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0009	8961	3	0	0	3	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0010	8961	3	0	2	0	0	1	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0011	8961	2	1	0	0	1	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0012	8961	2	2	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0013	8961	2	0	0	0	2	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0014	8961	2	2	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0015	8961	2	0	1	0	1	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0016	8961	2	0	0	1	1	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/1	c0017	8961	2	0	0	0	1	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0018	8961	2	0	0	2	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0019	8961	2	2	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0020	8961	2	0	2	0	0	0	copy fasta	KALRN	chr3	124028369	124731325