JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALPK1_chr4_112292369_112447621	0/0	c0026	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0027	3735	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0028	3735	1	0	1	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0029	3735	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0030	3735	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0031	3735	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0032	3735	1	0	0	0	0	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0033	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0034	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0035	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0036	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK2_chr18_58476247_58634091	0/0	c0001	6513	39	0	3	31	0	5	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0002	6498	37	1	6	27	1	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0003	6513	33	1	2	26	0	4	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0004	6498	30	2	8	9	5	6	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0005	6513	11	1	4	4	1	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0006	6513	7	1	2	0	2	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0007	6513	6	6	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0008	6513	6	3	1	2	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0009	6498	5	1	3	0	1	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0010	6513	5	0	0	4	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0011	6510	5	0	3	0	0	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0012	6513	5	0	1	4	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0013	6498	4	0	2	0	1	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0014	6498	4	2	2	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0015	6513	4	0	1	1	0	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0016	6513	4	0	0	4	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0017	6498	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0018	6498	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0019	6498	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0020	6498	3	2	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0021	6498	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0022	6498	3	2	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0023	6498	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0024	6513	3	2	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0025	6498	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0026	6510	3	0	2	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0027	6513	3	1	0	2	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0028	6513	2	0	2	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0029	6513	2	1	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0030	6498	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0031	6513	2	0	0	1	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0032	6513	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0033	6513	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0034	6513	2	1	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0035	6513	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0036	6498	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0037	6513	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0038	6498	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0039	6513	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091