JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KALRN_chr3_124028369_124731325	0/0	c0071	8961	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0072	8961	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0073	8961	1	0	1	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0074	8961	1	0	1	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0075	8961	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0076	8961	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0077	8961	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	c0078	8961	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KANK1_chr9_499695_751103	0/0	c0001	4059	80	1	19	47	4	9	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0002	4059	38	0	10	12	6	10	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0003	4059	19	0	4	15	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0004	4059	10	0	6	0	1	3	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0005	4059	7	4	1	0	2	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0006	4059	6	5	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/1	c0007	4059	5	0	2	0	1	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0008	4059	5	5	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0009	4059	4	4	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0010	4059	4	0	0	4	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0011	4059	3	3	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0012	4059	3	3	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0013	4059	3	2	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0014	4059	3	3	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0015	4059	3	0	0	3	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0016	4059	3	3	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0017	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0018	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0019	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0020	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0021	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0022	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0023	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0024	4059	2	1	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0025	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0026	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0027	4059	2	0	0	2	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0028	4059	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0029	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0030	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0031	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0032	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0033	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0034	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0035	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0036	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0037	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0038	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0039	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0040	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0041	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0042	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103