JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KANK1_chr9_499695_751103	0/0	c0043	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0044	4059	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0045	4059	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0046	4059	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0047	4059	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0048	4059	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0049	4059	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0050	4059	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0051	4059	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	1/0	c0052	4059	1	0	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0053	4059	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0054	4059	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0055	4059	1	0	0	0	1	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0056	4059	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0057	4059	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0058	4059	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0059	4059	1	0	0	0	1	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0060	4059	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0061	4059	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	c0062	4059	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK2_chr19_11159270_11202545	1/0	c0001	2556	173	38	33	80	7	14	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0002	2556	142	41	29	47	7	18	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0003	2556	12	3	2	3	2	2	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0004	2557	7	0	2	5	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0005	2557	6	0	2	4	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0006	2557	5	0	2	3	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0007	2556	4	4	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0008	2556	3	3	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0009	2556	3	0	0	3	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0010	2556	3	0	0	3	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0011	2557	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0012	2556	2	0	2	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0013	2556	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0014	2558	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0015	2556	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0016	2556	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0017	2556	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0018	2556	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0019	2558	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0020	2557	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0021	2556	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0022	2556	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0023	2557	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0024	2557	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0025	2556	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0026	2556	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0027	2556	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0028	2556	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0029	2556	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0030	2556	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545