JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KANK2_chr19_11159270_11202545	0/0	c0031	2556	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0032	2556	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0033	2556	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0034	2556	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0035	2556	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/1	c0036	2556	1	0	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0037	2556	1	0	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0038	2556	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	c0039	2556	1	0	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK3_chr19_8317584_8348262	1/0	c0001	2466	136	15	24	78	10	8	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0002	2454	85	8	27	39	4	7	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0003	2454	46	21	7	9	0	9	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0004	2463	26	25	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/1	c0005	2466	25	2	6	7	1	8	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0006	2463	24	0	8	8	3	5	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0007	2466	10	0	0	9	0	1	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0008	2466	7	0	0	7	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0009	2463	5	0	0	5	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0010	2466	4	1	0	0	0	3	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0011	2454	4	4	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0012	2466	4	4	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0013	2463	4	4	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0014	2466	3	0	0	3	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0015	2466	2	2	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0016	2454	2	2	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0017	2466	2	2	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0018	2466	2	0	0	2	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0019	2463	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0020	2463	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0021	2463	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0022	2466	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0023	2466	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0024	2466	1	0	0	0	0	1	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0025	2454	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0026	2454	1	0	0	1	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0027	2466	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0028	2466	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0029	2466	1	0	0	1	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0030	2466	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0031	2466	1	0	0	1	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0032	2454	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	c0033	2463	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK4_chr1_62231165_62324434	0/0	c0001	2988	76	11	13	45	3	4	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0002	2988	42	7	12	16	2	5	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/1	c0003	2988	39	0	11	15	4	8	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0004	2988	18	9	2	0	1	6	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0005	2988	10	9	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0006	2988	10	8	2	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0007	2988	9	0	0	9	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0008	2988	8	5	1	0	0	2	copy fasta	KANK4	chr1	62231165	62324434