JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KANK4_chr1_62231165_62324434	0/0	c0009	2988	8	1	0	6	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0010	2988	7	3	1	0	0	3	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0011	2988	6	0	3	0	1	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0012	2988	6	0	1	4	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0013	2988	5	1	4	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0014	2988	5	3	0	0	0	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0015	2988	5	0	0	3	0	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0016	2988	4	0	0	4	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0017	2988	4	2	2	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0018	2988	4	0	0	0	2	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0019	2988	3	2	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0020	2988	3	3	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0021	2988	3	1	0	1	1	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0022	2988	3	0	3	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	1/0	c0023	2988	2	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0024	2988	2	2	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0025	2988	2	1	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0026	2988	2	2	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0027	2988	2	1	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0028	2988	2	2	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0029	2988	2	1	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0030	2988	2	0	0	2	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0031	2988	2	2	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0032	2988	2	0	0	0	0	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0033	2988	1	0	0	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0034	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0035	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0036	2988	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0037	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0038	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0039	2988	1	0	0	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0040	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0041	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0042	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0043	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0044	2988	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0045	2988	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0046	2988	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0047	2988	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0048	2988	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0049	2988	1	0	0	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0050	2988	1	0	0	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0051	2988	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0052	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0053	2988	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0054	2988	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0055	2988	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	c0056	2988	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANSL1L_chr2_210016421_210176409	1/1	c0001	2964	267	66	45	114	12	28	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0002	2964	5	5	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409