JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KANSL1L_chr2_210016421_210176409	0/0	c0003	2964	2	2	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0004	2964	2	1	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0005	2964	2	0	0	2	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0006	2964	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0007	2964	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0008	2964	1	0	0	1	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0009	2964	1	0	0	1	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0010	2964	1	0	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	c0011	2964	1	0	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1_chr17_46024916_46198429	0/0	c0001	3318	141	64	18	48	5	6	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0002	3318	67	2	9	51	0	5	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/1	c0003	3318	61	14	13	17	3	13	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0004	3318	22	3	8	1	4	6	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0005	3318	9	0	4	0	4	1	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0006	3318	4	4	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0007	3318	3	0	0	3	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0008	3318	2	0	0	2	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0009	3318	2	2	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0010	3318	2	2	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0011	3318	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0012	3318	1	0	1	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0013	3318	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0014	3318	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0015	3318	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0016	3318	1	0	0	0	0	1	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0017	3318	1	0	1	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	c0018	3318	1	1	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL2_chr12_48648211_48687238	1/1	c0001	1479	136	44	25	46	4	15	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0002	1479	130	21	27	64	4	14	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0003	1479	29	9	8	0	5	7	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0004	1479	19	18	1	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0005	1479	4	0	3	0	1	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0006	1479	1	0	0	1	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0007	1479	1	0	0	1	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0008	1479	1	0	1	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	c0009	1479	1	0	1	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL3_chr2_96588172_96643312	1/1	c0001	2637	270	74	47	112	10	25	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0002	2637	46	0	0	41	0	5	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0003	2637	8	8	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0004	2637	5	0	5	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0005	2637	2	2	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0006	2637	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0007	2637	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0008	2637	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0009	2637	1	0	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0010	2637	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0011	2637	1	0	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0012	2637	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0013	2637	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	c0014	2637	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312