JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KANTR_chrX_53089142_53132438	1/1	c0001	231	249	74	35	105	11	22	copy fasta	KANTR	chrX	53089142	53132438
KARS1_chr16_75622724_75652665	1/1	c0001	1794	323	61	68	146	11	35	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0002	1794	30	22	6	2	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0003	1794	10	0	0	10	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0004	1794	6	0	3	0	1	2	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0005	1794	5	0	0	5	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0006	1794	1	0	1	0	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0007	1794	1	1	0	0	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0008	1794	1	0	0	1	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0009	1794	1	0	0	0	0	1	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0010	1794	1	0	0	1	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	c0011	1794	1	0	0	1	0	0	copy fasta	KARS1	chr16	75622724	75652665
KASH5_chr19_49383249_49422990	0/1	c0001	1689	156	27	27	71	7	23	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	1/0	c0002	1689	133	22	33	61	2	14	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0003	1689	18	17	1	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0004	1689	12	10	2	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0005	1689	12	12	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0006	1689	7	0	6	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0007	1689	2	2	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0008	1689	2	0	1	0	1	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0009	1689	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0010	1689	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0011	1660	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0012	1689	1	0	0	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0013	1689	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0014	1689	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0015	1689	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0016	1689	1	0	0	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0017	1689	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0018	1689	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0019	1689	1	0	0	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	c0020	1689	1	0	0	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KAT14_chr20_18132863_18193035	0/0	c0001	2346	172	82	34	25	12	19	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/1	c0002	2346	97	5	23	49	3	16	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0003	2346	34	2	6	18	3	5	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0004	2346	28	0	10	17	0	1	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0005	2346	4	0	2	0	0	2	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0006	2346	2	0	0	2	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0007	2346	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0008	2346	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0009	2346	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	1/0	c0010	2346	1	0	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0011	2346	1	0	1	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0012	2346	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0013	2346	1	0	0	0	0	1	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0014	2346	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	c0015	2346	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT2A_chr17_42108111_42126367	1/1	c0001	2514	312	69	62	124	15	40	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0002	2508	12	7	0	5	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0003	2514	7	0	4	0	3	0	copy fasta	KAT2A	chr17	42108111	42126367