JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KAT2A_chr17_42108111_42126367	0/0	c0004	2514	7	7	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0005	2514	3	3	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0006	2514	3	3	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0007	2514	1	0	0	0	0	1	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0008	2550	1	0	0	1	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0009	2514	1	1	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0010	2514	1	0	0	1	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0011	2514	1	0	1	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0012	2514	1	0	0	0	0	1	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0013	2514	1	0	0	1	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0014	2508	1	1	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0015	2514	1	0	1	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	c0016	2514	1	1	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2B_chr3_20035446_20159404	1/0	c0001	2499	176	32	34	78	10	21	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/1	c0002	2499	119	40	25	41	2	10	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0003	2499	39	4	2	32	0	1	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0004	2499	24	2	11	0	3	8	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0005	2499	5	5	0	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0006	2499	2	0	0	1	1	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0007	2499	2	0	1	0	1	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0008	2499	1	1	0	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0009	2499	1	0	0	0	0	1	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0010	2499	1	0	0	0	0	1	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0011	2499	1	0	0	0	1	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0012	2499	1	0	0	1	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0013	2499	1	0	0	1	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	c0014	2499	1	0	1	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT5_chr11_65707252_65724604	1/1	c0001	1641	431	87	78	205	18	41	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	c0002	1641	7	7	0	0	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	c0003	1641	1	0	1	0	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	c0004	1641	1	0	0	1	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	c0005	1641	1	0	0	0	0	1	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	c0006	1641	1	0	1	0	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT6A_chr8_41924479_42056987	1/1	c0001	6015	209	19	35	121	6	26	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0002	6015	71	7	16	41	0	7	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0003	6015	52	31	13	0	3	5	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0004	6015	9	9	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0005	6015	6	6	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0006	6012	4	0	0	4	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0007	6015	3	3	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0008	6015	3	2	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0009	6015	2	0	2	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0010	6015	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0011	6015	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0012	6015	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0013	6015	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0014	6015	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0015	6015	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0016	6015	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0017	6015	1	0	0	0	1	0	copy fasta	KAT6A	chr8	41924479	42056987