JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KAT6A_chr8_41924479_42056987	0/0	c0018	6015	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0019	6015	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0020	6015	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0021	6015	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0022	6015	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	c0023	6015	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6B_chr10_74821600_75037624	0/0	c0001	6219	114	41	17	39	1	16	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	1/1	c0002	6222	71	11	14	37	1	6	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0003	6219	22	8	4	9	1	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0004	6228	8	8	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0005	6219	2	0	0	2	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0006	6219	2	0	0	0	0	2	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0007	6219	2	2	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0008	6219	1	0	0	0	0	1	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0009	6219	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0010	6219	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0011	6219	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0012	6219	1	0	0	0	0	1	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0013	6219	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0014	6219	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0015	6219	1	0	1	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0016	6219	1	0	0	0	0	1	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0017	6219	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0018	6219	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0019	6222	1	0	0	0	1	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0020	6222	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0021	6219	1	0	0	0	0	1	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	c0022	6222	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT7_chr17_49783681_49840026	0/1	c0001	1836	250	80	44	93	10	22	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0002	1836	72	0	13	50	0	9	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0003	1836	14	13	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	1/0	c0004	1836	2	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0005	1836	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0006	1836	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0007	1836	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0008	1836	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0009	1836	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0010	1836	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0011	1836	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	c0012	1836	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT8_chr16_31112664_31136359	0/1	c0001	1377	276	79	73	86	10	27	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	1/0	c0002	1377	6	5	0	0	0	0	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	c0003	1377	2	0	0	0	2	0	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	c0004	1377	2	2	0	0	0	0	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	c0005	1377	1	1	0	0	0	0	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	c0006	1377	1	1	0	0	0	0	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	c0007	1377	1	0	0	0	0	1	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	c0008	1377	1	0	1	0	0	0	copy fasta	KAT8	chr16	31112664	31136359
KATNA1_chr6_149589873_149653714	0/0	c0001	1476	153	48	27	54	6	18	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	c0002	1476	140	34	26	46	10	24	copy fasta	KATNA1	chr6	149589873	149653714