JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KATNA1_chr6_149589873_149653714	0/0	c0003	1476	2	1	1	0	0	0	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	c0004	1476	1	1	0	0	0	0	copy fasta	KATNA1	chr6	149589873	149653714
KATNAL1_chr13_30197630_30312551	1/1	c0001	1473	375	84	67	168	14	40	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	c0002	1473	10	6	3	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	c0003	1473	1	0	0	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNB1_chr16_57730770_57762244	1/0	c0001	1968	177	41	24	94	5	12	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0002	1968	128	13	35	47	9	24	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0003	1968	22	0	0	20	0	2	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/1	c0004	1968	18	3	0	7	3	4	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0005	1968	13	13	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0006	1968	5	0	5	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0007	1968	4	4	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0008	1968	4	4	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0009	1968	4	0	0	4	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0010	1968	4	4	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0011	1968	3	0	1	2	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0012	1968	3	3	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0013	1968	3	3	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0014	1968	2	0	2	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0015	1968	2	0	1	1	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0016	1968	1	0	0	1	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0017	1968	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0018	1968	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0019	1968	1	0	0	1	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0020	1968	1	0	0	1	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0021	1968	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0022	1968	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0023	1968	1	0	0	0	1	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0024	1968	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	c0025	1968	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNBL1_chr15_34135674_34215096	1/1	c0001	915	338	84	58	148	12	34	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	c0002	915	6	6	0	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNIP_chr16_27545144_27785344	0/0	c0001	4857	57	28	6	20	2	1	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0002	4857	16	3	0	13	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0003	4857	13	1	6	0	4	2	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0004	4857	9	7	1	0	1	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0005	4857	6	6	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0006	4857	5	0	1	4	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0007	4857	5	5	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0008	4857	4	4	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0009	4857	3	0	2	0	0	1	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0010	4857	3	3	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0011	4857	2	1	1	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0012	4857	2	2	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0013	4857	2	0	0	2	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0014	4857	2	0	2	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0015	4857	2	2	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0016	4857	2	2	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0017	4857	2	2	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0018	4857	1	0	1	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344