Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA8_chr17_68862289_68960392	0/0	c0050	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0051	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0052	4866	1	0	0	0	1	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0053	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0054	4866	1	0	0	0	1	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0055	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0056	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0057	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA9_chr17_68969488_69065927	0/0	c0001	4875	87	12	7	52	3	13	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/1	c0002	4875	86	10	21	40	4	10	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	1/0	c0003	4875	34	23	3	0	0	7	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0004	4875	19	0	0	16	1	2	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0005	4875	18	16	2	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0006	4875	14	0	4	9	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0007	4875	11	2	4	0	4	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0008	4875	8	8	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0009	4875	5	2	3	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0010	4875	5	0	5	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0011	4875	2	2	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0012	4875	2	0	2	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0013	4875	2	1	1	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0014	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0015	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0016	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0017	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0018	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0019	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0020	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0021	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0022	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0023	4875	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0024	4875	1	0	0	0	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0025	4875	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0026	4875	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0027	4875	1	0	0	0	1	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0028	4875	1	0	0	0	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0029	4875	1	0	0	0	1	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0030	4875	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0031	4875	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	c0032	4875	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCB10_chr1_229511582_229563707	1/0	c0001	2217	157	39	39	47	7	24	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/1	c0002	2217	81	29	22	21	2	6	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0003	2217	15	12	1	1	1	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0004	2217	9	0	4	5	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0005	2217	6	5	1	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0006	2217	3	0	1	0	2	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0007	2217	3	1	2	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0008	2217	2	2	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0009	2217	1	1	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0010	2217	1	1	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707