JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KATNIP_chr16_27545144_27785344	0/0	c0019	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0020	4857	1	0	0	0	1	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/1	c0021	4857	1	0	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	1/0	c0022	4857	1	0	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0023	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0024	4857	1	0	0	1	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0025	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0026	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0027	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0028	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0029	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0030	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0031	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0032	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0033	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	c0034	4857	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KAZALD1_chr10_101056989_101072059	1/1	c0001	915	221	38	47	115	7	12	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0002	915	205	42	33	91	10	29	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0003	915	8	0	0	8	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0004	915	8	1	3	0	1	3	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0005	915	5	5	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0006	915	3	2	1	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0007	915	2	2	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0008	915	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	c0009	915	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZN_chr1_14593685_15123043	0/0	c0001	2328	64	36	14	5	4	5	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0002	2328	51	16	10	19	1	5	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0003	2328	6	4	0	0	1	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0004	2328	5	0	1	1	0	3	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0005	2328	4	0	0	4	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0006	2328	3	0	2	0	0	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0007	2328	2	0	1	0	0	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0008	2328	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0009	2328	1	0	0	0	0	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0010	2328	1	0	0	0	0	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0011	2328	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0012	2328	1	0	0	0	1	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0013	2328	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0014	2328	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0015	2328	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0016	2328	1	0	0	0	1	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0017	2328	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	c0018	2328	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KBTBD11_chr8_1968677_2011936	0/1	c0001	1872	372	83	71	152	18	47	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0002	1872	6	6	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0003	1872	2	0	2	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0004	1854	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0005	1872	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0006	1872	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0007	1872	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936