JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KBTBD11_chr8_1968677_2011936	0/0	c0008	1872	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0009	1872	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0010	1872	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0011	1872	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	c0012	1872	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD12_chr3_127910232_127992666	0/0	c0001	1872	140	53	18	54	5	10	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/1	c0002	1872	82	16	8	42	1	14	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	1/0	c0003	1872	74	11	19	31	4	8	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	c0004	1872	48	1	9	32	2	4	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	c0005	1872	42	7	6	21	2	6	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	c0006	1872	12	0	1	10	1	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	c0007	1872	2	2	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	c0008	1872	1	0	0	0	1	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	c0009	1872	1	0	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD13_chr15_65071746_65084948	0/0	c0001	1377	198	36	37	102	9	14	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/1	c0002	1377	115	22	21	47	7	17	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0003	1377	23	4	10	4	2	3	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0004	1377	9	9	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	1/0	c0005	1377	6	3	2	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0006	1377	5	5	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0007	1377	3	3	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0008	1377	3	3	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0009	1377	2	0	2	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0010	1377	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0011	1377	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0012	1377	1	0	0	0	0	1	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0013	1377	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0014	1377	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0015	1377	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0016	1377	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0017	1377	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0018	1377	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0019	1377	1	0	0	0	0	1	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0020	1377	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0021	1377	1	0	1	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0022	1377	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0023	1377	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0024	1377	1	0	1	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0025	1377	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0026	1377	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	c0027	1377	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD2_chr7_32863172_32896760	1/1	c0001	1872	342	80	49	163	9	39	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	c0002	1872	88	9	24	45	1	9	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	c0003	1872	3	3	0	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	c0004	1872	1	0	1	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD3_chr11_106046098_106082347	1/1	c0001	1839	357	72	63	172	10	38	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	c0002	1839	4	4	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	c0003	1839	2	2	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	c0004	1839	1	1	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	c0005	1839	1	1	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347