JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KBTBD3_chr11_106046098_106082347	0/0	c0006	1839	1	0	1	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD4_chr11_47567197_47583970	1/0	c0001	1605	398	78	73	190	16	40	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0002	1605	4	4	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0003	1605	3	3	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0004	1605	2	2	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0005	1605	2	0	2	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0006	1605	1	0	0	1	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0007	1605	1	0	0	1	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0008	1605	1	0	1	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	c0009	1605	1	1	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/1	c0010	1605	1	0	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD6_chr13_41122569_41137802	0/1	c0001	2025	330	68	41	181	12	27	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	1/0	c0002	2025	11	8	1	0	0	1	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	c0003	2025	6	5	1	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	c0004	2025	6	6	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	c0005	2025	4	0	0	4	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	c0006	2025	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	c0007	2025	1	0	1	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	c0008	2025	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD7_chr13_41184834_41199569	1/0	c0001	2055	245	81	17	129	1	16	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/1	c0002	2055	202	10	54	96	15	26	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0003	2055	9	0	9	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0004	2055	2	0	2	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0005	2055	1	0	0	0	0	1	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0006	2055	1	0	0	0	0	1	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0007	2055	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0008	2055	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0009	2055	1	0	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	c0010	2055	1	0	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD8_chr3_66993307_67016210	1/1	c0001	1806	323	81	51	137	13	39	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0002	1806	41	3	22	10	3	3	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0003	1806	8	0	0	8	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0004	1806	7	0	5	0	0	2	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0005	1806	3	3	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0006	1806	2	2	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0007	1806	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0008	1806	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0009	1806	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0010	1806	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0011	1806	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	c0012	1806	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KCMF1_chr2_84966161_85064472	1/1	c0001	1146	271	71	44	112	10	32	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	c0002	1146	3	3	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCNA10_chr1_110512217_110524175	0/1	c0001	1536	200	16	48	97	11	27	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	1/0	c0002	1536	113	36	13	52	2	9	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0003	1536	64	11	17	29	3	4	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0004	1536	33	1	3	25	0	4	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0005	1536	8	7	1	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0006	1536	6	0	0	6	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0007	1536	5	5	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175