JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNA10_chr1_110512217_110524175	0/0	c0008	1536	4	4	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0009	1536	4	4	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0010	1536	3	3	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0011	1536	2	2	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0012	1536	1	0	0	1	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0013	1536	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0014	1536	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0015	1536	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0016	1536	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	c0017	1536	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA1_chr12_4904905_4923256	0/0	c0001	1488	215	34	38	119	6	18	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/1	c0002	1488	120	41	18	42	3	15	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	1/0	c0003	1488	57	13	13	12	6	12	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	c0004	1488	30	0	0	30	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	c0005	1488	22	9	4	8	0	1	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	c0006	1488	2	1	1	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	c0007	1488	1	0	1	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	c0008	1488	1	0	0	1	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	c0009	1488	1	0	1	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	c0010	1488	1	0	0	0	1	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA2_chr1_110588580_110611358	1/1	c0001	1500	424	88	64	214	14	42	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	c0002	1500	9	0	5	0	0	4	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	c0003	1500	4	4	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	c0004	1500	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA3_chr1_110667465_110679940	1/1	c0001	1728	425	88	70	210	15	40	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	c0002	1728	3	3	0	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	c0003	1728	1	1	0	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	c0004	1728	1	0	0	0	1	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	c0005	1743	1	0	1	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	c0006	1728	1	0	1	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA4_chr11_30004730_30022030	1/1	c0001	1962	319	49	60	159	13	36	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0002	1962	60	33	8	8	3	8	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0003	1962	4	0	2	1	0	1	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0004	1962	3	3	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0005	1962	2	2	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0006	1962	1	0	0	0	0	1	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0007	1962	1	1	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0008	1962	1	1	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	c0009	1962	1	1	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA5_chr12_5038879_5051788	0/0	c0001	1842	407	73	74	201	15	44	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	1/0	c0002	1842	8	6	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0003	1842	7	5	2	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0004	1842	6	6	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0005	1842	4	1	2	0	1	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0006	1842	4	0	3	0	0	1	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0007	1842	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0008	1842	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0009	1842	1	0	0	0	0	1	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/1	c0010	1809	1	0	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0011	1842	1	0	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788