JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNA5_chr12_5038879_5051788	0/0	c0012	1842	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0013	1842	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0014	1842	1	0	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0015	1842	1	0	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0016	1842	1	0	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0017	1842	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0018	1842	1	0	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0019	1842	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0020	1842	1	0	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0021	1842	1	0	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	c0022	1842	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA6_chr12_4804334_4818318	1/0	c0001	1590	247	51	44	116	7	28	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/1	c0002	1590	199	46	30	99	5	18	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	c0003	1590	2	0	0	0	0	2	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	c0004	1590	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	c0005	1590	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA7_chr19_49062397_49077699	1/0	c0001	1371	235	40	46	106	8	34	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/1	c0002	1371	93	15	17	49	4	7	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0003	1368	46	21	10	8	0	7	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0004	1368	5	5	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0005	1368	4	4	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0006	1371	2	2	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0007	1371	2	2	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0008	1371	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0009	1368	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0010	1368	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0011	1371	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0012	1371	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0013	1371	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0014	1371	1	0	1	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0015	1371	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	c0016	1371	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNAB1_chr3_156115578_156543605	0/0	c0001	1260	85	57	13	8	0	7	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0002	1260	21	11	3	4	0	3	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0003	1260	4	4	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0004	1260	3	3	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0005	1260	3	3	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0006	1260	2	2	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0007	1260	2	0	0	2	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0009	1260	1	0	0	0	0	1	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0010	1260	1	0	0	0	0	1	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	c0011	1260	1	1	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB2_chr1_6040888_6106180	1/0	c0001	1248	168	16	31	89	7	24	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/1	c0002	1248	134	35	27	43	10	18	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0003	1248	18	15	0	0	0	3	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0004	1248	17	9	4	0	1	3	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0005	1248	8	7	1	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0006	1248	4	4	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0007	1248	2	0	2	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180