JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNAB2_chr1_6040888_6106180	0/0	c0008	1248	2	1	1	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0009	1248	1	0	1	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0010	1248	1	0	1	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0011	1248	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0012	1248	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0013	1248	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0014	1248	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	c0015	1248	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB3_chr17_7916859_7934856	1/1	c0001	1215	419	92	76	195	14	40	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0002	1215	2	2	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0003	1215	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0004	1215	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0005	1215	1	1	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0007	1215	1	1	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0008	1215	1	1	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	c0009	1215	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNB1_chr20_49358877_49487668	1/1	c0001	2577	257	68	43	90	12	42	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0002	2577	13	12	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0003	2577	2	0	2	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0004	2577	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0005	2577	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0006	2577	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0007	2577	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0008	2577	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	c0009	2577	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB2_chr8_72532225_72943349	0/0	c0001	2736	114	45	19	30	3	17	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0002	2736	23	6	8	4	2	3	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0003	2736	11	3	1	2	0	5	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0004	2736	6	5	1	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0005	2736	2	1	0	0	1	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0006	2736	2	0	0	0	0	2	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0007	2736	1	0	0	0	0	1	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0008	2736	1	1	0	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0009	2736	1	0	1	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0010	2736	1	0	1	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0011	2736	1	1	0	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	c0012	2736	1	0	1	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNC1_chr11_17729781_17788057	1/1	c0001	1758	314	82	59	115	17	39	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0002	1758	7	7	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0003	1758	3	3	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0004	1758	2	2	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0005	1758	2	0	1	0	1	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0006	1758	1	0	0	0	0	1	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0007	1758	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0008	1758	1	0	0	1	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	c0009	1758	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC2_chr12_75035078_75214839	1/1	c0001	1917	290	76	34	139	10	29	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	c0002	1917	9	2	6	0	0	1	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	c0003	1917	7	6	1	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839