JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNC2_chr12_75035078_75214839	0/0	c0004	1917	5	3	1	0	0	1	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	c0005	1917	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	c0006	1917	1	0	0	0	0	1	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	c0007	1917	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	c0008	1917	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	c0009	1917	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC3_chr19_50306937_50334377	0/1	c0001	2274	296	71	70	103	16	35	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0002	2274	27	0	0	21	0	6	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0003	2275	11	2	3	5	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0004	2274	11	10	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0005	2274	4	1	3	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	1/0	c0006	2274	2	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0007	2274	2	1	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0008	2274	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0009	2275	2	0	0	2	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0010	2274	2	1	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0011	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0012	2274	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0013	2274	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0014	2274	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0015	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0016	2275	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0017	2274	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0018	2274	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0019	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0020	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0021	2274	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0022	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0023	2274	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0024	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0025	2274	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0026	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0027	2274	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0028	2274	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0029	2274	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0030	2274	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	c0031	2274	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC4_chr1_110205314_110239044	1/1	c0001	1881	360	70	63	166	15	44	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0002	1881	35	11	3	18	2	1	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0003	1881	15	4	4	7	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0004	1881	3	3	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0005	1881	2	1	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0006	1881	1	0	0	0	0	1	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0007	1881	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0008	1881	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0009	1881	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0010	1881	1	0	0	0	1	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0011	1881	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0012	1881	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0013	1881	1	0	0	0	0	1	copy fasta	KCNC4	chr1	110205314	110239044