JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNC4_chr1_110205314_110239044	0/0	c0014	1881	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0015	1881	1	0	0	0	0	1	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0016	1881	1	0	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0017	1881	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0018	1881	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0019	1881	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	c0020	1881	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCND1_chrX_48956380_48976844	0/1	c0001	1944	251	39	44	126	13	28	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	1/0	c0002	1944	32	28	3	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0003	1944	7	6	1	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0004	1944	4	4	0	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0005	1944	4	0	4	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0006	1944	2	0	0	0	0	2	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0007	1944	2	0	2	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0008	1944	1	1	0	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0009	1945	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0010	1944	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	c0011	1944	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND2_chr7_120268175_120755337	1/1	c0001	1893	74	48	10	8	4	2	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	c0002	1893	3	3	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	c0003	1893	2	2	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	c0004	1893	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND3_chr1_111765662_111994668	1/1	c0001	1968	203	59	43	71	3	25	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	c0002	1968	14	9	0	5	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	c0003	1968	4	2	0	0	1	1	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	c0004	1968	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	c0005	1968	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	c0006	1968	1	0	1	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	c0007	1968	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	c0008	1968	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCNE1_chr21_34441690_34517210	1/0	c0001	390	15	2	5	0	3	4	copy fasta	KCNE1	chr21	34441690	34517210
KCNE1_chr21_34441690_34517210	0/1	c0002	390	3	0	1	0	1	0	copy fasta	KCNE1	chr21	34441690	34517210
KCNE2_chr21_34359006_34376381	1/1	c0001	372	429	92	75	198	14	48	copy fasta	KCNE2	chr21	34359006	34376381
KCNE2_chr21_34359006_34376381	0/0	c0002	372	2	1	1	0	0	0	copy fasta	KCNE2	chr21	34359006	34376381
KCNE2_chr21_34359006_34376381	0/0	c0003	372	1	0	0	1	0	0	copy fasta	KCNE2	chr21	34359006	34376381
KCNE2_chr21_34359006_34376381	0/0	c0004	372	1	1	0	0	0	0	copy fasta	KCNE2	chr21	34359006	34376381
KCNE2_chr21_34359006_34376381	0/0	c0005	372	1	0	0	1	0	0	copy fasta	KCNE2	chr21	34359006	34376381
KCNE3_chr11_74449841_74472549	1/1	c0001	312	373	87	66	170	14	34	copy fasta	KCNE3	chr11	74449841	74472549
KCNE3_chr11_74449841_74472549	0/0	c0002	312	72	13	7	38	2	12	copy fasta	KCNE3	chr11	74449841	74472549
KCNE3_chr11_74449841_74472549	0/0	c0003	312	1	0	1	0	0	0	copy fasta	KCNE3	chr11	74449841	74472549
KCNE4_chr2_223047190_223060637	0/0	c0001	513	180	31	31	89	7	22	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/1	c0002	513	103	14	12	66	2	8	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	c0003	513	26	25	1	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	1/0	c0004	513	19	4	2	5	0	7	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	c0005	513	17	11	1	1	1	3	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	c0006	513	11	1	3	7	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	c0007	513	2	0	2	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE5_chrX_109618700_109630172	1/1	c0001	429	278	63	46	131	10	26	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	c0002	429	10	1	4	0	1	4	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	c0003	429	2	0	0	2	0	0	copy fasta	KCNE5	chrX	109618700	109630172