JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNE5_chrX_109618700_109630172	0/0	c0004	429	2	2	0	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	c0005	429	1	0	0	1	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	c0006	429	1	0	1	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	c0007	432	1	0	0	1	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNF1_chr2_10906934_10919225	0/1	c0001	1485	198	34	34	96	11	22	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0002	1485	171	44	25	90	3	9	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	1/0	c0003	1485	42	3	14	9	3	12	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0004	1485	10	8	2	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0005	1485	4	4	0	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0006	1485	3	3	0	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0007	1485	3	0	1	0	1	1	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0008	1485	2	2	0	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0009	1485	1	0	1	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0010	1485	1	0	0	1	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	c0011	1485	1	0	1	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNG1_chr20_50998656_51028107	0/1	c0001	1542	258	29	56	127	13	32	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	1/0	c0002	1542	156	65	17	57	3	13	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0003	1542	2	0	0	1	0	1	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0004	1542	2	0	0	2	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0005	1542	1	0	0	1	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0006	1542	1	1	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0007	1542	1	1	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0008	1542	1	0	1	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0009	1542	1	1	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	c0010	1542	1	1	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG2_chr18_79792938_79905100	1/0	c0001	1401	177	56	32	64	6	18	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0002	1404	75	9	14	39	4	9	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0003	1401	18	1	3	6	3	5	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0004	1404	16	0	4	5	3	4	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0005	1401	10	9	1	0	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0006	1401	4	0	0	4	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0007	1401	3	3	0	0	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0008	1389	2	0	0	2	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0009	1401	2	0	2	0	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0010	1401	1	0	0	1	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0011	1401	1	0	0	0	0	1	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0012	1401	1	0	0	0	0	1	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	c0013	1401	1	0	0	1	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/1	c0014	1401	1	0	0	0	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG3_chr2_42437017_42498982	1/1	c0001	1311	334	81	72	125	16	38	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	c0002	1311	5	5	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	c0003	1311	1	1	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	c0004	1311	1	1	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	c0005	1311	1	0	0	1	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG4_chr16_84213657_84245012	1/0	c0001	1560	146	19	32	72	6	16	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0002	1560	60	10	9	37	0	4	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0003	1560	41	10	9	12	3	7	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0004	1560	30	0	5	25	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/1	c0005	1560	27	7	3	7	3	6	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0006	1560	25	7	7	11	0	0	copy fasta	KCNG4	chr16	84213657	84245012