JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNG4_chr16_84213657_84245012	0/0	c0007	1560	13	2	0	7	0	4	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0008	1560	12	0	3	7	2	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0009	1560	11	2	2	6	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0010	1560	9	5	3	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0011	1560	8	0	0	8	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0012	1560	7	4	2	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0013	1560	5	5	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0014	1560	5	1	0	2	0	2	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0015	1560	5	0	3	0	0	2	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0016	1560	5	0	0	4	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0017	1560	5	5	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0018	1569	5	0	0	5	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0019	1560	4	4	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0020	1560	4	0	1	2	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0021	1569	3	3	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0022	1560	3	1	1	0	1	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0023	1560	2	0	2	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0024	1560	2	2	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0025	1569	2	1	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0026	1560	2	0	0	2	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0027	1560	2	0	0	2	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0028	1560	2	0	0	0	0	2	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0029	1560	2	1	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0030	1560	1	0	0	0	1	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0031	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0032	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0033	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0034	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0035	1560	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0036	1560	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0037	1560	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0038	1560	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0039	1560	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0040	1560	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0041	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0042	1560	1	0	0	0	1	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0043	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0044	1560	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0045	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0046	1560	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0047	1560	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0048	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0049	1560	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0050	1560	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0051	1560	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0052	1560	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0053	1569	1	0	0	0	1	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	c0054	1560	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNH1_chr1_210673314_211139148	0/1	c0001	2970	112	56	20	23	1	11	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	1/0	c0002	2970	44	11	12	16	2	2	copy fasta	KCNH1	chr1	210673314	211139148