JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALPK2_chr18_58476247_58634091	0/0	c0090	6498	1	0	0	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0091	6498	1	0	0	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0092	6498	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0093	6498	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0094	6513	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	c0095	6513	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK3_chr15_84812356_84878479	0/1	c0001	5118	99	30	7	51	1	9	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0002	5118	42	8	2	29	0	3	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	1/0	c0003	5118	27	0	13	1	2	10	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0004	5118	26	15	6	3	1	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0005	5118	23	1	13	8	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0006	5118	21	1	6	14	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0007	5118	12	0	0	12	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0008	5118	7	0	0	7	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0009	5118	6	0	5	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0010	5118	5	0	2	3	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0011	5118	5	5	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0012	5118	4	3	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0013	5118	4	4	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0014	5118	4	0	1	3	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0015	5118	4	4	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0016	5118	4	3	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0017	5118	3	2	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0018	5118	3	2	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0019	5118	2	0	0	0	0	2	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0020	5118	2	0	1	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0021	5118	2	0	0	2	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0022	5118	2	2	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0023	5118	2	2	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0024	5118	2	0	2	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0025	5118	2	0	0	0	0	2	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0026	5118	2	0	0	2	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0027	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0028	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0029	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0030	5118	1	0	0	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0031	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0032	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0033	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0034	5118	1	0	0	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0035	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0036	5118	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0037	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0038	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0039	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0040	5118	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0041	5118	1	0	0	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0042	5118	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0043	5118	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0044	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479