JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNH1_chr1_210673314_211139148	0/0	c0003	2970	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	c0004	2970	1	0	1	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	c0005	2970	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	c0006	2970	1	0	0	0	0	1	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	c0007	2970	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	c0008	2970	1	0	1	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	c0009	2970	1	0	0	0	1	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	c0010	2970	1	0	0	1	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH2_chr7_150939961_150983321	0/1	c0001	3480	131	16	24	73	5	12	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0002	3480	97	46	7	35	0	9	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	1/0	c0003	3480	59	6	20	15	7	10	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0004	3480	32	1	13	7	4	7	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0005	3480	7	7	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0006	3480	5	5	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0007	3480	5	0	0	4	0	1	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0008	3480	4	2	0	1	0	1	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0009	3480	3	0	0	3	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0010	3480	2	0	2	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0011	3480	2	0	0	2	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0012	3480	2	2	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0013	3480	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0014	3480	1	0	0	1	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0015	3480	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0016	3480	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0017	3480	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0018	3480	1	0	1	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0019	3480	1	0	0	1	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0020	3480	1	0	1	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	c0021	3480	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH3_chr12_49534030_49563337	1/0	c0001	3252	140	23	28	58	9	21	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0002	3252	26	11	3	9	1	2	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0003	3252	23	13	5	2	1	2	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0004	3252	16	9	2	1	1	3	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0005	3252	13	13	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/1	c0006	3252	12	0	6	0	1	4	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0007	3252	6	5	1	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0008	3252	5	5	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0009	3252	4	2	2	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0010	3252	3	0	1	0	0	2	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0011	3252	2	0	1	0	1	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0012	3252	2	2	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0013	3252	2	0	0	2	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0014	3252	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0015	3252	1	0	1	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0016	3252	1	0	0	0	0	1	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0017	3252	1	0	0	0	0	1	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0018	3252	1	0	0	1	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0019	3252	1	0	0	1	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0020	3252	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0021	3252	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337