JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNH3_chr12_49534030_49563337	0/0	c0022	3252	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	c0023	3252	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH4_chr17_42151891_42186142	1/1	c0001	3054	215	59	41	83	6	24	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0002	3054	68	3	11	44	1	9	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0003	3054	23	21	2	0	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0004	3054	7	7	0	0	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0005	3054	5	0	0	5	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0006	3054	1	0	0	1	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0007	3054	1	0	0	1	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0008	3054	1	0	0	0	0	1	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0009	3054	1	0	0	0	1	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0010	3054	1	0	1	0	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0011	3054	1	0	0	1	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0012	3009	1	0	0	1	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	c0013	3054	1	0	1	0	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH5_chr14_62694464_63050458	0/1	c0001	2967	164	39	29	81	8	6	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	c0002	2967	40	15	9	13	0	3	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	1/0	c0003	2967	11	9	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	c0004	2967	4	0	3	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	c0005	2967	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	c0006	2967	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	c0007	2967	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	c0008	2967	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	c0009	2967	1	0	0	0	0	1	copy fasta	KCNH5	chr14	62694464	63050458
KCNH6_chr17_63518358_63551727	1/0	c0001	2877	135	16	28	73	5	12	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0002	2877	72	11	21	27	5	8	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/1	c0003	2877	39	13	4	8	5	8	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0004	2877	9	8	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0005	2877	7	6	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0006	2877	7	7	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0007	2877	6	4	1	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0008	2877	4	0	0	4	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0009	2877	4	4	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0010	2877	3	0	3	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0011	2877	3	3	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0012	2877	2	2	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0013	2877	2	2	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0014	2877	2	2	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0015	2877	2	2	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0016	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0017	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0018	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0019	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0020	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0021	2877	1	0	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0022	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0023	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0024	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0025	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0026	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727