JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNH6_chr17_63518358_63551727	0/0	c0027	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0028	2877	1	0	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0029	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0030	2877	1	0	0	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0031	2877	1	0	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0032	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0033	2877	1	0	0	0	1	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0034	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0035	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0036	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0037	2877	1	0	0	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0038	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0039	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0040	2877	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0041	2877	1	0	0	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	c0042	2877	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH7_chr2_162366407_162843767	1/1	c0001	3591	69	41	6	20	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	c0002	3591	13	11	2	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	c0003	3591	11	0	2	9	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	c0004	3591	3	3	0	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	c0005	3591	1	0	0	1	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	c0006	3591	1	1	0	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	c0007	3591	1	1	0	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	c0008	3591	1	1	0	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH8_chr3_19143510_19540642	1/0	c0001	3324	103	38	21	29	4	10	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	c0002	3324	9	5	0	1	2	1	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	c0003	3324	9	8	1	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/1	c0004	3324	7	1	0	0	2	3	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	c0005	3324	2	2	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	c0006	3324	1	1	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	c0007	3324	1	0	1	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	c0008	3324	1	0	1	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	c0009	3324	1	1	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNIP1_chr5_170499020_170741632	0/0	c0001	651	215	79	42	56	8	30	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	c0002	651	2	0	0	0	0	2	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	c0003	651	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP2_chr10_101820974_101848800	1/1	c0001	813	380	75	72	175	16	40	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	c0002	813	1	0	0	1	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	c0003	813	1	1	0	0	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP3_chr2_95292347_95391077	1/1	c0001	771	294	62	56	136	4	34	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	c0002	771	2	0	0	2	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	c0003	771	1	0	1	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	c0004	771	1	0	1	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP4_chr4_20723606_21953772	0/0	c0001	753	57	42	5	6	3	1	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	c0002	753	20	8	5	1	1	5	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	c0003	753	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	c0004	753	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	c0005	753	1	0	0	1	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNJ10_chr1_160032467_160075160	1/1	c0001	1140	393	94	71	173	10	43	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	c0002	1140	4	0	0	4	0	0	copy fasta	KCNJ10	chr1	160032467	160075160