JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNJ10_chr1_160032467_160075160	0/0	c0003	1140	3	0	2	0	0	1	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	c0004	1140	2	0	2	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	c0005	1140	2	0	2	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	c0006	1140	1	0	0	1	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	c0007	1140	1	0	1	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	c0008	1140	1	1	0	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	c0009	1140	1	1	0	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ11_chr11_17380248_17393659	0/1	c0001	1173	181	78	42	36	4	20	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0002	1173	117	1	15	89	4	8	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	1/0	c0003	1173	104	0	17	64	6	16	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0004	1173	5	0	2	0	0	3	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0005	1173	3	1	2	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0006	1173	3	3	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0007	1173	2	1	1	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0008	1173	2	1	1	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0009	1173	1	0	0	1	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0011	1173	1	0	0	0	0	1	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0012	1173	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	c0013	1173	1	0	0	1	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ12_chr17_21371357_21424870	1/1	c0001	1302	364	83	73	148	14	44	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	c0002	1302	3	3	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	c0003	1302	3	3	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	c0004	1302	3	2	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	c0005	1302	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	c0006	1302	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	c0007	1302	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ13_chr2_232760802_232781565	1/1	c0001	1083	291	64	50	147	8	20	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	c0002	1083	152	31	27	64	4	26	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	c0003	1083	1	1	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	c0004	1083	1	0	1	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	c0005	1083	1	0	0	1	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ14_chr19_48450574_48471980	0/0	c0001	1311	378	89	72	175	6	36	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	c0002	1311	8	0	0	8	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	c0003	1311	2	0	0	0	1	1	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	c0004	1311	1	0	0	1	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	c0005	1311	1	1	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	c0006	1311	1	0	0	0	0	1	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	c0007	1311	1	0	0	0	1	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ15_chr21_38251991_38312357	1/1	c0001	1128	270	75	37	120	7	29	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	c0002	1128	101	5	22	60	3	11	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	c0003	1128	27	12	4	11	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	c0004	1128	4	0	0	4	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	c0005	1128	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	c0006	1128	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	c0007	1128	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	c0008	1128	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ16_chr17_70070225_70140608	1/1	c0001	1257	287	63	58	124	10	30	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0002	1257	22	21	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0003	1257	7	6	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608