JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNJ16_chr17_70070225_70140608	0/0	c0004	1257	5	4	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0005	1257	3	0	0	1	0	2	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0006	1257	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0007	1257	1	0	0	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0008	1257	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0009	1257	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0010	1257	1	0	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	c0011	1257	1	0	0	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ18_chr17_21687523_21709612	0/0	c0001	1302	41	1	4	33	0	3	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0002	1299	31	0	3	28	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0003	1302	12	0	0	12	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/1	c0004	1302	10	2	0	7	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0005	1299	8	1	0	5	2	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	1/0	c0006	1302	2	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0007	1299	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0008	1299	1	0	0	0	0	1	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0009	1299	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0010	1299	1	1	0	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0011	1302	1	0	1	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0012	1302	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0013	1302	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	c0014	1302	1	1	0	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ1_chr11_128833020_128872296	1/0	c0001	1119	284	62	52	125	12	32	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0002	1119	5	0	4	1	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0003	1119	3	3	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0004	1119	3	0	0	3	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0005	1119	2	0	0	0	0	2	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0006	1119	1	0	0	1	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0007	1119	1	0	0	0	0	1	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	c0009	1119	1	0	0	0	0	1	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ2_chr17_70164532_70185044	1/1	c0001	1284	359	58	54	188	17	40	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	c0002	1284	60	13	18	20	1	8	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	c0003	1284	24	22	2	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	c0004	1284	2	0	0	2	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	c0005	1284	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	c0006	1284	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	c0007	1284	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ3_chr2_154693695_154863354	1/1	c0001	1506	249	75	45	92	5	30	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ3_chr2_154693695_154863354	0/0	c0002	1506	28	8	11	4	3	2	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ3_chr2_154693695_154863354	0/0	c0003	1506	5	1	0	2	0	2	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ3_chr2_154693695_154863354	0/0	c0004	1506	2	0	0	2	0	0	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ4_chr22_38421327_38460199	0/0	c0001	1338	295	63	44	141	8	39	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	1/1	c0002	1338	52	9	19	8	7	7	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	c0003	1338	20	15	2	0	1	2	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	c0004	1338	4	3	1	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	c0005	1338	3	0	1	0	0	2	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	c0006	1338	2	0	2	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	c0007	1338	1	0	1	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	c0008	1338	1	1	0	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199