JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNJ4_chr22_38421327_38460199	0/0	c0009	1338	1	0	0	1	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	c0010	1338	1	1	0	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ5_chr11_128886356_128926163	0/0	c0001	1260	393	84	69	183	15	42	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/1	c0002	1260	53	8	7	29	2	6	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0003	1260	2	0	2	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0004	1260	2	2	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	1/0	c0005	1260	2	0	0	0	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0006	1260	2	2	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0007	1260	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0009	1260	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0010	1260	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0011	1260	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	c0012	1260	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ6_chr21_37602373_37921457	0/0	c0001	1272	131	60	23	38	4	6	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/1	c0002	1272	32	11	8	5	3	4	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	c0003	1272	26	0	4	19	1	2	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	1/0	c0004	1272	6	1	1	3	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	c0005	1272	2	0	2	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	c0006	1272	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ8_chr12_21759955_21779706	1/1	c0001	1275	316	64	63	140	8	39	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	c0002	1275	9	8	1	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	c0003	1275	4	0	0	3	0	1	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	c0004	1275	3	3	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	c0005	1275	1	1	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	c0006	1275	1	0	0	1	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ9_chr1_160076538_160095563	1/0	c0001	1182	342	82	59	154	6	40	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/1	c0002	1182	81	13	21	38	6	2	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	c0003	1182	4	0	0	4	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	c0004	1182	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	c0005	1182	1	0	0	1	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNK10_chr14_88175108_88328269	1/0	c0001	1632	168	37	36	69	6	19	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0002	1632	69	34	7	26	0	2	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0003	1632	49	1	4	35	2	7	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0004	1632	18	1	12	1	1	3	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/1	c0005	1632	12	1	4	2	1	3	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0006	1632	5	5	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0007	1632	3	1	2	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0008	1632	3	0	1	0	0	2	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0009	1632	3	3	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0010	1632	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0011	1632	1	0	0	1	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0012	1632	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	c0013	1632	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK12_chr2_47504290_47575985	0/0	c0001	1293	236	78	26	101	6	25	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	1/1	c0002	1293	147	11	34	77	4	19	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	c0003	1293	3	0	1	0	2	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	c0004	1293	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	c0005	1293	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985