JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNK13_chr14_90056994_90190853	1/0	c0001	1227	218	46	48	87	8	28	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0002	1227	41	10	4	21	2	4	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0003	1227	26	22	2	0	0	2	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0004	1227	9	0	8	0	1	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0005	1227	5	5	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0006	1227	3	0	0	3	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0007	1227	3	2	1	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0008	1227	2	2	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0009	1227	2	2	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0010	1227	2	0	1	0	1	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/1	c0011	1227	1	0	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0012	1227	1	0	0	1	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0013	1227	1	0	0	0	0	1	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0014	1227	1	0	0	0	0	1	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0015	1227	1	0	0	1	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0016	1227	1	0	0	1	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0017	1227	1	0	0	1	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0018	1227	1	1	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	c0019	1227	1	0	0	1	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK15_chr20_44740865_44757313	0/1	c0001	993	167	45	26	74	6	15	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	1/0	c0002	993	160	21	38	74	4	22	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0003	993	61	6	4	46	1	4	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0004	993	10	7	3	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0005	993	10	10	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0006	993	4	4	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0007	1104	3	0	0	0	1	2	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0008	993	1	1	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0009	993	1	0	0	0	0	1	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0010	993	1	0	1	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0011	993	1	0	0	1	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0012	993	1	0	1	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0013	993	1	0	0	1	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	c0014	993	1	0	1	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK16_chr6_39311171_39327702	1/0	c0001	885	188	3	28	124	8	24	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0002	885	140	47	23	53	7	10	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/1	c0003	885	87	36	15	22	1	12	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0004	885	16	0	11	3	0	2	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0005	885	8	0	0	6	0	2	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0006	885	8	7	1	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0007	885	2	0	0	2	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0008	885	2	2	0	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0009	885	1	1	0	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0010	885	1	0	0	1	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0011	885	1	1	0	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0012	885	1	0	0	1	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	c0013	885	1	1	0	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK17_chr6_39294001_39319419	1/0	c0001	999	217	12	46	122	10	26	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/1	c0002	999	214	73	32	77	7	24	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0003	999	5	5	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0004	999	4	4	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419