JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNK17_chr6_39294001_39319419	0/0	c0005	999	4	0	0	4	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0006	999	2	0	2	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0007	999	2	2	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0008	999	1	1	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0009	999	1	0	0	1	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0010	999	1	0	0	0	1	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0011	999	1	1	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0012	999	1	0	0	1	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	c0013	999	1	0	0	1	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK18_chr10_117192489_117215299	1/1	c0001	1155	327	73	60	147	14	31	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0002	1155	45	10	5	23	0	7	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0003	1155	37	0	5	26	2	4	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0004	1155	9	9	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0005	1155	3	3	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0006	1155	2	0	0	2	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0007	1155	1	0	0	0	0	1	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0009	1155	1	1	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0010	1155	1	0	0	0	0	1	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0011	1155	1	1	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0012	1155	1	1	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	c0013	1155	1	0	0	1	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK1_chr1_233609106_233677514	1/1	c0001	1011	415	94	76	180	14	49	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	c0002	1011	2	2	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	c0003	1011	1	1	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	c0004	1011	1	0	0	1	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	c0005	1011	1	1	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	c0006	1011	1	0	0	0	0	1	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	c0007	1011	1	0	0	1	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK2_chr1_215077737_215242090	1/1	c0001	1281	216	39	37	101	8	29	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	c0002	1281	29	23	3	1	0	2	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	c0003	1281	14	0	0	12	0	2	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	c0004	1281	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK3_chr2_26687722_26738420	1/1	c0001	1185	324	81	68	125	16	32	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	c0002	1185	11	9	2	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	c0003	1185	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK4_chr11_64286302_64305031	0/1	c0001	1182	182	21	47	77	12	24	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	c0002	1182	134	23	25	75	3	8	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	1/0	c0003	1182	85	52	2	22	0	8	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	c0004	1182	1	0	1	0	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	c0005	1182	1	0	0	0	1	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	c0007	1182	1	0	1	0	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	c0008	1182	1	0	0	1	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK5_chr6_39183971_39234475	1/1	c0001	1500	393	75	76	180	14	46	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0002	1500	12	11	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0003	1500	3	3	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0004	1500	2	2	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0005	1500	2	2	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0006	1500	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475