JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNK5_chr6_39183971_39234475	0/0	c0007	1500	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0008	1500	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0009	1500	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0010	1500	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0011	1500	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0012	1500	1	0	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0013	1500	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0014	1500	1	0	0	0	1	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0015	1500	1	0	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0016	1500	1	0	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	c0017	1500	1	0	0	0	1	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK6_chr19_38314845_38337076	1/1	c0001	942	294	59	51	147	15	20	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0002	942	56	4	12	23	1	16	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0003	942	20	0	9	11	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0004	942	8	8	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0005	942	5	2	2	0	0	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0006	942	4	0	1	0	0	3	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0007	942	2	2	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0008	942	2	0	0	0	0	2	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0009	942	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0010	942	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0011	942	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0012	942	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0013	942	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0014	942	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	c0015	942	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK7_chr11_65587836_65600800	1/1	c0001	924	404	91	71	174	18	48	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	c0002	924	8	0	0	8	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	c0003	924	7	5	1	1	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	c0004	924	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	c0005	924	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	c0006	924	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	c0007	924	1	0	0	1	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	c0008	924	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK9_chr8_139612121_139708123	0/1	c0001	1125	219	71	34	88	2	23	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	1/0	c0002	1125	102	15	28	45	2	11	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	c0003	1125	1	0	0	1	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNMA1_chr10_76879882_77642808	0/0	c0001	3711	51	31	5	9	1	5	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0002	3711	41	8	12	13	3	5	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0003	3711	4	4	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0004	3711	3	3	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0005	3711	2	1	1	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0006	3711	1	0	1	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0007	3711	1	0	1	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0008	3711	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0009	3711	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	c0010	3711	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMB1_chr5_170369671_170394367	1/0	c0001	576	301	66	52	141	11	30	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	c0002	576	61	17	9	25	4	6	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	c0003	576	56	6	14	27	3	6	copy fasta	KCNMB1	chr5	170369671	170394367