JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNMB1_chr5_170369671_170394367	0/0	c0004	576	8	8	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	c0005	576	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	c0006	576	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	c0007	576	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	c0008	576	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/1	c0009	576	1	0	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	c0010	576	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB2_chr3_178531436_178849429	0/0	c0001	708	155	69	34	28	7	17	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	c0002	708	73	8	12	41	5	7	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	c0003	708	2	0	0	2	0	0	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	c0004	708	1	1	0	0	0	0	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	c0005	708	1	0	0	1	0	0	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB3_chr3_179237771_179256114	1/0	c0001	828	213	27	44	114	6	21	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0002	828	77	33	16	12	3	13	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0003	827	34	21	11	0	1	1	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0004	828	11	0	0	5	0	6	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0005	828	10	0	4	6	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0006	828	8	2	0	3	0	3	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0007	828	6	3	2	0	1	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/1	c0008	828	5	0	2	0	2	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0009	828	2	2	0	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0010	828	1	0	0	0	1	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0011	828	1	0	1	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0012	828	1	1	0	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	c0013	828	1	1	0	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB4_chr12_70361290_70439292	1/1	c0001	633	378	96	72	164	10	34	copy fasta	KCNMB4	chr12	70361290	70439292
KCNN1_chr19_17962107_18005085	1/1	c0001	1632	351	79	66	156	13	35	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0002	1633	8	1	1	4	0	2	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0003	1632	6	6	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0004	1632	3	3	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0005	1632	2	0	0	2	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0006	1632	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0007	1632	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0008	1632	1	0	0	0	0	1	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0009	1633	1	0	1	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0010	1632	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0011	1632	1	0	0	0	1	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0012	1632	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	c0013	1632	1	1	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN2_chr5_114357070_114501496	1/0	c0001	2376	105	37	28	14	10	15	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/1	c0002	2379	100	16	23	41	3	16	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0003	2376	6	6	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0004	2379	5	5	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0005	2379	4	3	1	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0006	2376	4	4	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0007	2379	4	4	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0008	2382	3	3	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0009	2376	2	2	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0010	2376	2	2	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0011	2379	2	1	1	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496