JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALPK3_chr15_84812356_84878479	0/0	c0045	5118	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0046	5118	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0047	5118	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0048	5118	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0049	5118	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0050	5118	1	0	0	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	c0051	5118	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPL_chr1_21504423_21583410	0/0	c0001	1575	194	43	44	80	10	17	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/1	c0002	1575	121	22	23	60	3	12	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	1/0	c0003	1575	18	12	2	1	0	2	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0004	1575	13	1	5	0	3	4	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0005	1575	4	0	0	4	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0006	1575	3	3	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0007	1575	2	0	0	0	0	2	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0008	1575	2	2	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0009	1575	2	2	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0010	1575	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0011	1575	1	0	0	1	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0012	1575	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0013	1575	1	0	0	1	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0014	1575	1	0	0	1	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0015	1575	1	0	0	1	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0016	1575	1	0	0	0	0	1	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0017	1575	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0018	1575	1	0	0	1	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0019	1575	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	c0020	1575	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPP_chr2_232373751_232387889	0/0	c0001	1608	150	22	29	83	4	12	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0002	1608	68	20	8	35	1	4	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0003	1608	45	0	3	36	2	4	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/1	c0004	1608	35	7	11	5	4	7	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	1/0	c0005	1608	28	0	6	14	2	5	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0006	1608	23	11	2	1	2	7	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0007	1608	7	2	0	5	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0008	1608	6	6	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0009	1608	5	5	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0010	1608	5	5	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0011	1608	3	0	0	3	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0012	1608	3	0	0	0	0	3	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0013	1608	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0014	1608	2	0	2	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0015	1608	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0016	1608	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0017	1608	2	0	2	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0018	1608	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0019	1608	2	0	0	0	0	2	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0020	1608	2	0	0	2	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0021	1608	1	0	0	0	0	1	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0022	1608	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0023	1608	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889