JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNN2_chr5_114357070_114501496	0/0	c0012	2382	2	0	2	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0013	2379	1	1	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0014	2379	1	1	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0015	2376	1	1	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0016	2379	1	0	0	1	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0017	2379	1	0	0	1	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0018	2376	1	0	0	1	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0019	2376	1	0	1	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0020	2376	1	0	0	0	1	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0021	2376	1	1	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0022	2376	1	1	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	c0023	2379	1	0	0	0	0	1	copy fasta	KCNN2	chr5	114357070	114501496
KCNN3_chr1_154692455_154875281	0/0	c0001	2211	40	4	10	16	1	9	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0002	2208	27	16	3	2	3	3	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0003	2205	22	12	3	0	1	6	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0004	2211	18	1	5	11	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/1	c0005	2214	12	1	1	6	1	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0006	2214	12	1	4	5	1	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0007	2205	11	9	2	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0008	2211	10	3	4	0	1	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0009	2208	7	5	0	2	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0010	2208	7	5	2	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0011	2196	6	3	1	0	2	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0012	2217	5	2	0	2	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0013	2217	5	4	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0014	2214	4	1	0	1	0	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	1/0	c0015	2196	4	2	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0016	2193	4	2	0	0	2	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0017	2190	4	4	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0018	2202	3	2	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0019	2193	3	2	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0020	2190	3	3	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0021	2190	3	3	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0022	2202	2	0	1	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0023	2226	2	0	0	0	0	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0024	2223	2	1	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0025	2223	2	1	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0026	2220	2	1	0	0	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0027	2217	2	0	0	2	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0028	2205	2	2	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0029	2199	2	1	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0030	2199	2	2	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0031	2196	2	0	2	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0032	2187	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0033	2217	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0034	2202	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0035	2196	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0036	2196	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0037	2193	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	c0038	2184	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281