JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNN3_chr1_154692455_154875281	0/0	c0039	2208	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN4_chr19_43761533_43785973	1/1	c0001	1284	435	98	83	190	18	44	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	c0002	1284	1	1	0	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	c0003	1284	1	0	0	1	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	c0004	1284	1	0	0	1	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	c0005	1284	1	1	0	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	c0006	1284	1	0	1	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNQ1_chr11_2440008_2854105	1/0	c0001	2031	153	77	29	25	7	14	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/1	c0002	2031	24	1	10	8	1	3	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0003	2031	6	0	3	0	0	3	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0004	2031	5	0	0	5	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0005	2031	4	4	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0006	2040	3	3	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0007	2031	3	0	3	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0008	2031	2	0	0	2	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0009	2031	2	2	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0010	2040	1	1	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0011	2031	1	1	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0012	2031	1	0	0	1	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0013	2031	1	1	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0014	2031	1	0	1	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	c0015	2031	1	0	0	1	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ2_chr20_63395208_63477655	1/1	c0001	2619	110	34	30	30	4	10	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0002	2619	74	32	19	8	7	8	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0003	2619	41	0	7	29	0	5	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0004	2619	18	10	4	0	3	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0005	2619	13	0	3	7	1	2	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0006	2619	11	0	1	9	1	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0007	2619	9	0	0	0	0	9	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0008	2619	8	0	0	6	0	2	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0009	2619	6	0	0	6	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0010	2619	4	0	0	4	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0011	2619	4	0	4	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0012	2619	4	0	0	4	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0013	2619	3	3	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0014	2619	3	0	0	0	0	3	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0015	2619	2	2	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0016	2619	2	0	0	2	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0017	2619	2	2	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0018	2619	2	0	0	2	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0019	2619	2	0	2	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0020	2619	2	2	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0021	2619	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0022	2619	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0023	2619	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0024	2619	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0025	2619	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0026	2619	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0027	2619	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0028	2619	1	0	0	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655