JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNQ2_chr20_63395208_63477655	0/0	c0029	2619	1	0	0	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	c0030	2619	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ3_chr8_132115861_132486095	0/0	c0001	2619	147	67	24	30	1	25	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0002	2619	18	0	3	13	1	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0003	2619	2	0	1	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0004	2619	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0005	2619	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0006	2619	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0007	2619	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0008	2619	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	c0009	2619	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ4_chr1_40778787_40845452	1/0	c0001	2088	156	34	31	68	4	18	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/1	c0002	2088	108	47	17	18	10	15	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0003	2088	51	1	8	35	1	6	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0004	2088	15	1	7	6	0	1	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0005	2088	14	0	5	4	1	4	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0006	2088	4	0	0	4	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0007	2088	3	0	0	3	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0008	2088	3	0	1	0	1	1	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0009	2088	2	0	0	2	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0010	2088	2	0	1	0	1	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0011	2088	2	0	0	0	0	2	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0012	2088	2	0	0	1	0	1	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0013	2088	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0014	2088	1	0	1	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0015	2088	1	0	1	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0016	2088	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0017	2088	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0018	2088	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0019	2088	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0020	2088	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0021	2088	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	c0022	2088	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ5_chr6_72617064_73203853	0/0	c0001	2799	41	26	6	8	0	1	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0002	2799	25	12	2	11	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0003	2799	4	4	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0004	2799	2	1	1	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0005	2799	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0006	2799	1	0	0	0	0	1	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0007	2799	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0008	2799	1	0	0	1	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0009	2799	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0010	2799	1	0	1	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0011	2799	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	c0012	2799	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNRG_chr13_50010444_50025922	1/1	c0001	819	445	96	72	211	16	48	copy fasta	KCNRG	chr13	50010444	50025922
KCNRG_chr13_50010444_50025922	0/0	c0002	819	3	0	0	3	0	0	copy fasta	KCNRG	chr13	50010444	50025922
KCNS1_chr20_45086214_45106127	1/1	c0001	1581	276	34	45	151	9	35	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0002	1581	85	48	21	5	4	7	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0003	1581	36	2	10	17	3	4	copy fasta	KCNS1	chr20	45086214	45106127