JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNS1_chr20_45086214_45106127	0/0	c0004	1581	13	0	0	13	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0005	1581	7	6	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0006	1581	2	2	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0007	1581	2	1	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0008	1581	2	0	0	0	0	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0009	1581	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0010	1581	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	c0011	1581	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS2_chr8_98421958_98437853	1/1	c0001	1434	429	97	73	203	15	39	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	c0002	1434	2	0	0	2	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	c0003	1434	2	0	0	0	1	1	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	c0004	1434	1	0	1	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	c0005	1434	1	0	0	1	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	c0006	1434	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS3_chr2_17873667_17937958	0/0	c0001	1476	150	17	26	77	6	24	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0002	1476	143	28	17	77	6	15	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/1	c0003	1476	35	6	15	3	3	7	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0004	1476	16	12	3	0	0	1	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	1/0	c0005	1476	14	12	1	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0006	1476	7	6	1	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0007	1476	7	1	3	0	3	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0008	1476	2	1	1	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0009	1476	2	2	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0010	1476	2	0	0	2	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0011	1476	1	1	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0012	1476	1	0	0	0	0	1	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0013	1476	1	0	0	1	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0014	1476	1	0	1	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0015	1476	1	1	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	c0016	1476	1	1	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNT1_chr9_135697185_135800502	0/1	c0001	3708	101	18	34	26	6	16	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0002	3708	58	21	6	21	1	9	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	1/0	c0003	3708	50	17	7	18	4	3	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0004	3708	29	12	6	11	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0005	3708	5	0	0	5	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0006	3708	4	3	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0007	3708	2	0	0	2	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0008	3708	2	0	2	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0009	3708	2	2	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0010	3708	2	2	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0011	3708	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0012	3708	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0013	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0014	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0015	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0016	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0017	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0018	3708	1	0	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0019	3708	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0020	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502