JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNT1_chr9_135697185_135800502	0/0	c0021	3708	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0022	3708	1	0	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0023	3708	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0024	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0025	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0026	3708	1	0	0	0	1	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	c0027	3708	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT2_chr1_196220779_196613440	0/1	c0001	3408	114	57	29	13	3	11	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	c0002	3408	6	6	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	1/0	c0003	3408	6	5	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	c0004	3408	3	0	1	1	1	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	c0005	3408	3	3	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	c0006	3408	2	2	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	c0007	3408	1	1	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	c0008	3408	1	0	0	0	0	1	copy fasta	KCNT2	chr1	196220779	196613440
KCNU1_chr8_36779374_36941125	1/0	c0001	3450	89	19	16	45	3	5	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/1	c0002	3450	83	22	22	24	6	8	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0003	3450	55	17	8	22	2	6	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0004	3450	38	0	1	34	0	3	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0005	3450	9	1	0	8	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0006	3450	5	5	0	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0007	3450	3	3	0	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0008	3450	1	1	0	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0009	3450	1	0	1	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0010	3450	1	0	0	0	1	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0011	3450	1	1	0	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0012	3450	1	0	1	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0013	3450	1	0	0	1	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0014	3450	1	0	0	0	0	1	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0015	3450	1	0	0	1	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0016	3450	1	0	0	1	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0017	3450	1	0	0	0	0	1	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0018	3450	1	1	0	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	c0019	3450	1	0	1	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNV1_chr8_109958636_109980771	1/1	c0001	1503	362	90	61	151	14	44	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	c0002	1503	5	0	0	5	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	c0003	1503	3	2	1	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	c0004	1549	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	c0005	1503	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV2_chr9_2712510_2735037	0/0	c0001	1638	200	24	37	128	4	7	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	1/1	c0002	1638	87	18	16	25	5	21	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0003	1638	39	6	6	16	2	9	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0004	1638	20	0	12	1	2	5	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0005	1638	13	12	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0006	1638	9	8	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0007	1638	9	1	1	2	4	1	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0008	1638	8	7	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0009	1638	8	0	0	8	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0010	1638	6	0	0	6	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0011	1638	4	4	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037