JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCNV2_chr9_2712510_2735037	0/0	c0012	1638	3	0	0	3	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0013	1638	3	3	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0014	1638	3	0	2	0	0	1	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0015	1638	3	0	2	0	1	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0016	1638	3	3	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0017	1638	3	0	1	2	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0018	1638	2	0	0	2	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0019	1638	2	2	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0020	1638	2	2	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0021	1638	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0022	1638	1	0	0	0	0	1	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0023	1638	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0024	1638	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0025	1638	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0026	1638	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0027	1638	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0028	1638	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0029	1638	1	0	0	0	0	1	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0030	1638	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0031	1638	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0032	1638	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0033	1638	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0034	1638	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	c0035	1638	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCP_chr7_128871865_128915709	1/1	c0001	4887	124	9	32	55	6	20	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0002	4887	32	0	5	24	0	3	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0003	4887	29	2	3	17	2	5	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0004	4887	18	10	3	4	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0005	4887	16	9	0	6	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0006	4887	15	14	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0007	4887	10	5	0	2	0	3	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0008	4887	8	0	0	6	1	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0009	4887	6	0	2	4	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0010	4887	5	5	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0011	4887	4	0	0	4	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0012	4887	4	4	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0013	4887	3	0	0	2	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0014	4887	3	0	0	3	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0015	4887	3	2	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0016	4887	3	0	0	1	1	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0017	4887	3	0	2	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0018	4890	3	0	2	0	1	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0019	4887	3	3	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0020	4887	3	1	2	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0021	4887	2	2	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0022	4887	2	0	2	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0023	4887	2	2	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0024	4887	2	0	0	1	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0025	4887	2	0	0	2	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0026	4887	2	2	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709