JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCP_chr7_128871865_128915709	0/0	c0077	4887	1	0	0	0	1	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0078	4887	1	0	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0079	4887	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0080	4887	1	0	0	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0081	4887	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0082	4887	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0083	4887	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0084	4887	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0085	4887	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0086	4887	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	c0087	4887	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCTD10_chr12_109443655_109482300	1/1	c0001	942	298	64	55	139	10	28	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	c0002	942	67	14	12	29	6	6	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	c0003	942	6	5	1	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	c0004	942	5	5	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	c0005	942	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	c0006	942	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD11_chr17_7347162_7359944	1/1	c0001	816	407	92	83	169	16	45	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	c0002	816	4	4	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	c0003	816	2	1	1	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	c0004	816	1	1	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	c0005	816	1	1	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	c0006	816	1	1	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	c0007	816	1	0	0	1	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	c0008	816	1	0	0	0	0	1	copy fasta	KCTD11	chr17	7347162	7359944
KCTD12_chr13_76875175_76891405	1/0	c0001	978	436	77	75	224	17	42	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0002	978	15	6	3	0	1	5	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0003	978	4	4	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0004	978	4	3	1	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0005	978	2	2	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0006	978	2	2	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0007	978	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0008	978	1	0	1	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0009	978	1	0	0	0	0	1	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	c0010	978	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/1	c0011	978	1	0	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD13_chr16_29901339_29931226	1/1	c0001	990	356	84	63	156	16	35	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	c0002	990	1	0	1	0	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	c0003	990	1	0	0	0	0	1	copy fasta	KCTD13	chr16	29901339	29931226
KCTD14_chr11_78010715_78028276	0/1	c0001	768	287	48	67	116	17	38	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	1/0	c0002	768	151	19	14	107	1	9	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	c0003	768	23	23	0	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	c0004	768	3	3	0	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	c0005	768	1	0	0	0	0	1	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	c0006	768	1	0	0	1	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	c0007	768	1	1	0	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	c0008	768	1	0	1	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD15_chr19_33791870_33820761	1/1	c0001	852	322	75	69	121	15	40	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	c0002	852	45	15	4	20	3	3	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	c0003	852	2	0	1	0	0	1	copy fasta	KCTD15	chr19	33791870	33820761