JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCTD15_chr19_33791870_33820761	0/0	c0004	852	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD16_chr5_144165873_144490686	0/0	c0001	1287	146	47	34	40	8	17	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	c0002	1287	6	6	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	c0003	1287	2	0	0	2	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	c0004	1287	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	c0005	1287	1	0	0	0	0	1	copy fasta	KCTD16	chr5	144165873	144490686
KCTD17_chr22_37046742_37068390	0/1	c0001	945	304	50	67	138	13	35	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	1/0	c0002	945	32	29	0	0	0	2	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0003	945	22	10	6	0	2	4	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0004	945	5	0	2	0	1	2	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0005	945	2	2	0	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0006	945	1	0	0	0	0	1	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0007	945	1	0	1	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0008	945	1	1	0	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0009	945	1	0	1	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	c0010	945	1	0	1	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD18_chr2_200483958_200515068	1/0	c0001	1281	246	47	43	123	7	25	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/1	c0002	1281	138	21	22	75	9	10	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0003	1281	25	2	14	0	2	7	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0004	1281	8	6	2	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0005	1281	8	8	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0006	1281	4	0	0	4	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0007	1281	3	3	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0008	1281	2	2	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0009	1281	2	2	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0010	1281	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0011	1281	1	0	0	0	0	1	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0012	1281	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0013	1281	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0014	1281	1	0	0	0	0	1	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	c0015	1281	1	0	1	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD19_chr16_67284432_67331741	1/1	c0001	2781	160	23	45	60	7	23	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0002	2781	35	28	1	0	1	5	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0003	2781	23	15	4	0	1	3	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0004	2781	2	0	0	0	0	2	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0005	2781	2	1	1	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0006	2781	2	2	0	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0007	2781	2	0	0	0	2	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0008	2781	1	1	0	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0009	2781	1	0	0	0	1	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0010	2781	1	1	0	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0011	2781	1	1	0	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0012	2781	1	0	1	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	c0013	2781	1	0	0	0	0	1	copy fasta	KCTD19	chr16	67284432	67331741
KCTD1_chr18_26449910_26553553	1/1	c0001	2598	228	65	38	87	12	24	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0002	2598	36	13	8	12	1	2	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0003	2599	29	6	7	11	1	4	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0004	2598	17	4	7	1	2	3	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0005	2595	8	1	1	0	1	5	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0006	2599	4	0	2	2	0	0	copy fasta	KCTD1	chr18	26449910	26553553