JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCTD1_chr18_26449910_26553553	0/0	c0007	2571	3	0	0	3	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0008	2598	3	0	0	3	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0009	2598	2	2	0	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0010	2595	1	1	0	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0011	2598	1	0	0	1	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0012	2598	1	0	1	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0013	2598	1	0	1	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0014	2599	1	0	1	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0015	2598	1	0	0	1	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0016	2599	1	0	0	1	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	c0017	2598	1	0	0	0	1	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD20_chr6_36438000_36496141	1/1	c0001	1260	224	45	48	102	8	19	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0002	1260	130	40	16	56	4	14	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0003	1260	3	0	0	3	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0004	1260	2	2	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0005	1260	2	2	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0006	1260	2	2	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0007	1260	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	c0009	1260	1	0	0	0	0	1	copy fasta	KCTD20	chr6	36438000	36496141
KCTD21_chr11_78166249_78193626	1/1	c0001	783	422	92	75	194	16	43	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	c0002	783	3	0	3	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	c0003	783	2	0	0	2	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	c0004	783	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	c0005	783	1	0	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	c0006	783	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD2_chr17_75042225_75070886	1/1	c0001	792	404	98	75	166	18	45	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	c0002	792	1	0	0	0	0	1	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	c0003	792	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	c0004	792	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	c0005	792	1	0	1	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD3_chr1_215562304_215626807	1/0	c0001	2448	102	54	4	37	3	3	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0002	2448	93	5	21	54	2	11	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/1	c0003	2448	91	17	29	32	3	9	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0004	2448	20	0	0	16	0	4	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0005	2448	2	0	0	2	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0006	2448	2	0	0	0	0	2	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0007	2448	1	0	0	1	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0008	2448	1	0	1	0	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0009	2448	1	0	1	0	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	c0010	2448	1	0	0	0	0	1	copy fasta	KCTD3	chr1	215562304	215626807
KCTD4_chr13_45187853_45206045	1/1	c0001	780	350	90	60	152	12	34	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	c0002	780	1	0	0	1	0	0	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	c0003	780	1	0	0	1	0	0	copy fasta	KCTD4	chr13	45187853	45206045
KCTD5_chr16_2677523_2714030	1/1	c0001	705	397	89	78	162	17	49	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	c0002	705	12	10	2	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	c0003	705	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	c0004	705	1	1	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	c0005	705	1	0	0	0	0	1	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	c0006	705	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030