JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALPP_chr2_232373751_232387889	0/0	c0024	1608	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0025	1608	1	0	0	0	0	1	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0026	1608	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0027	1608	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0028	1608	1	0	0	0	1	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0029	1608	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0030	1608	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0031	1608	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0032	1608	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0033	1658	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0034	1608	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0035	1608	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	c0036	1608	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALS2CL_chr3_46663995_46698679	1/0	c0001	2862	102	5	22	61	6	7	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/1	c0002	2862	92	9	23	38	4	17	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0003	2862	68	8	12	40	2	6	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0004	2862	37	29	5	2	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0005	2862	16	0	1	13	0	2	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0006	2862	12	12	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0007	2862	11	0	3	3	3	2	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0008	2862	7	5	2	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0009	2862	5	3	2	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0010	2862	4	4	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0011	2862	3	3	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0012	2862	3	3	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0013	2862	2	1	1	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0014	2862	2	0	0	2	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0015	2862	2	0	0	2	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0016	2862	2	2	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0017	2862	1	0	1	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0018	2862	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0019	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0020	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0021	2862	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0022	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0023	2862	1	0	0	0	1	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0024	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0025	2862	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0026	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0027	2862	1	0	0	0	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0028	2862	1	0	0	0	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0029	2862	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0030	2862	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0031	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0032	2862	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0033	2862	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0034	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0035	2862	1	0	0	0	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0036	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	c0037	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679